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Publications

Skin Microbiome Variation with Cancer Progression in Human Cutaneous Squamous Cell Carcinoma.

Voigt AY. et al, (2022), J invest dermatol

Metagenomics: a path to understanding the gut microbiome.

Yen S. and Johnson JS., (2021), Mamm genome

Longitudinal Analysis of Serum Cytokine Levels and Gut Microbial Abundance Links IL-17/IL-22 With Clostridia and Insulin Sensitivity in Humans

Zhou X. et al, (2020), Diabetes, 69, 1833 - 1842

Does temperature constrain diet choice in a marine herbivorous fish?

Johnson JS. et al, (2020), Marine biology, 167

Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis

Johnson JS. et al, (2019), Nature communications, 10

New statistical method identifies cytokines that distinguish stool microbiomes

Yang D. et al, (2019), Scientific reports, 9

Microbiome Signatures Associated With Steatohepatitis and Moderate to Severe Fibrosis in Children With Nonalcoholic Fatty Liver Disease

Schwimmer JB. et al, (2019), Gastroenterology, 157, 1109 - 1122

MSC: a metagenomic sequence classification algorithm

Saha S. et al, (2019), Bioinformatics, 35, 2932 - 2940

CGAT-core: a python framework for building scalable, reproducible computational biology workflows

Cribbs AP. et al, (2019), F1000research, 8, 377 - 377

Longitudinal multi-omics of host–microbe dynamics in prediabetes

Zhou W. et al, (2019), Nature, 569, 663 - 671

The nutritional basis of seasonal selective feeding by a marine herbivorous fish

Johnson JS. et al, (2017), Marine biology, 164

11β-hydroxysteroid dehydrogenase-1 deficiency alters the gut microbiome response to Western diet.

Johnson JS. et al, (2017), J endocrinol, 232, 273 - 283

Long noncoding RNAs in B-cell development and activation.

Brazão TF. et al, (2016), Blood, 128, e10 - e19

Molecular analysis shows that soil fungi from ancient semi-natural woodland exist in sites converted to non-native conifer plantations

Johnson J. et al, (2014), Forestry: an international journal of forest research, 87, 705 - 717

CGAT: computational genomics analysis toolkit.

Sims D. et al, (2014), Bioinformatics, 30, 1290 - 1291

Effect of ingestion on the stable isotope signatures of marine herbivorous fish diets

Johnson JS. et al, (2012), Journal of experimental marine biology and ecology, 438, 137 - 143

Demographic risk factors for classical and atypical scrapie in Great Britain.

Green DM. et al, (2007), J gen virol, 88, 3486 - 3492

Disease dynamics over very different time-scales: foot-and-mouth disease and scrapie on the network of livestock movements in the UK.

Kao RR. et al, (2007), J r soc interface, 4, 907 - 916

Include forthcoming?