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Publications

A longitudinal single-cell atlas of anti-tumour necrosis factor treatment in inflammatory bowel disease.

Thomas T. et al, (2024), Nat immunol, 25, 2152 - 2165

MHC class II antigen presentation by intestinal epithelial cells fine-tunes bacteria-reactive CD4 T-cell responses.

Heuberger CE. et al, (2024), Mucosal immunol, 17, 416 - 430

Alterations in the gut microbiome implicate key taxa and metabolic pathways across inflammatory arthritis phenotypes.

Thompson KN. et al, (2023), Sci transl med, 15

Adipocyte autophagy limits gut inflammation by controlling oxylipin and IL-10.

Richter FC. et al, (2023), Embo j

A conserved population of MHC II-restricted, innate-like, commensal-reactive T cells in the gut of humans and mice.

Hackstein C-P. et al, (2022), Nat commun, 13

Pharmacologically induced weight loss is associated with distinct gut microbiome changes in obese rats.

Raineri S. et al, (2022), Bmc microbiol, 22

The bacteriology of pleural infection (TORPIDS): an exploratory metagenomics analysis through next generation sequencing.

Kanellakis NI. et al, (2022), Lancet microbe, 3, e294 - e302

Streamlined processing and analysis of 16S rRNA amplicon sequencing data with OCMS_16S and OCMSlooksy

Yen S. et al, (2022), Wellcome open research, 7, 68 - 68

Tissue-dependent transcriptional and bacterial associations in primary sclerosing cholangitis-associated inflammatory bowel disease

Ilott NE. et al, (2021), Wellcome open research, 6, 199 - 199

Accurate identification and quantification of commensal microbiota bound by host immunoglobulins.

Jackson MA. et al, (2021), Microbiome, 9

Gut microbiota: sculptors of the intestinal stem cell niche in health and inflammatory bowel disease.

Markandey M. et al, (2021), Gut microbes, 13

Mom's diet matters: Maternal prebiotic intake in mice reduces anxiety and alters brain gene expression and the fecal microbiome in offspring.

Hebert JC. et al, (2021), Brain behav immun, 91, 230 - 244

Recent advances and future directions in microbiome metabolomics

Misheva M. et al, (2021), Current opinion in endocrine and metabolic research

Tissue-dependent transcriptional and bacterial associations in primary sclerosing cholangitis-associated inflammatory bowel disease.

Ilott NE. et al, (2021), Wellcome open res, 6

Deconvolution of monocyte responses in inflammatory bowel disease reveals an IL-1 cytokine network that regulates IL-23 in genetic and acquired IL-10 resistance.

Aschenbrenner D. et al, (2020), Gut

Correction: Defining the microbial transcriptional response to colitis through integrated host and microbiome profiling.

Ilott NE. et al, (2020), Isme j, 14

THE MICROBIOLOGY OF PLEURAL INFECTION, AN APPROACH BASED ON 16S RRNA GENE NEXT GENERATION SEQUENCING

Kanellakis NI. et al, (2019), Thorax, 74, A10 - A10

Host-microbial crosstalk in the pathogenesis of inflammation and cancer in Primary Sclerosing Cholangitis (PSC)

Neyazi M. et al, (2019), European journal of immunology, 49, 941 - 941

Systems-level analysis of monocyte responses in inflammatory bowel disease identifies IL-10 and IL-1 cytokine networks that regulate IL-23

ASCHENBRENNER D. et al, (2019)

Host-microbial crosstalk in the pathogenesis of inflammation and cancer in primary sclerosing cholangitis

(2019), Journal of crohn's and colitis

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