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Publications

Multi-ancestry genome-wide association analyses identify novel genetic mechanisms in rheumatoid arthritis.

Ishigaki K. et al, (2022), Nat genet

A FLOT1 host regulatory allele is associated with a recently expanded Mtb clade in patients with tuberculosis

Luo Y., (2022), Medrxiv

Multi-population genome-wide association study implicates both immune and non-immune factors in the etiology of pediatric steroid sensitive nephrotic syndrome

Barry A. et al, (2022)

Single-cell eQTL models reveal dynamic T cell state dependence of disease loci

Nathan A. et al, (2022), Nature, 606, 120 - 128

HLA autoimmune risk alleles restrict the hypervariable region of T cell receptors

Ishigaki K. et al, (2022), Nature genetics, 54, 393 - 402

Paired analysis of host and pathogen genomes identifies determinants of human tuberculosis

Raychaudhuri S. et al, (2022)

Trans-ancestry genome-wide association study identifies novel genetic mechanisms in rheumatoid arthritis

Ishigaki K. et al, (2021)

Accurate imputation of human leukocyte antigens with CookHLA

Cook S. et al, (2021), Nature communications, 12

Author Correction: A high-resolution HLA reference panel capturing global population diversity enables multi-ancestry fine-mapping in HIV host response

Luo Y. et al, (2021), Nature genetics, 53, 1722 - 1722

Population-specific causal disease effect sizes in functionally important regions impacted by selection

Shi H. et al, (2021), Nature communications, 12

A sex-specific evolutionary interaction between ADCY9 and CETP.

Gamache I. et al, (2021), Elife, 10

A high-resolution HLA reference panel capturing global population diversity enables multi-ancestry fine-mapping in HIV host response.

Luo Y. et al, (2021), Nat genet, 53, 1504 - 1516

Modeling memory T cell states at single-cell resolution identifies in vivo state-dependence of eQTLs influencing disease

Nathan A. et al, (2021)

Multimodally profiling memory T cells from a tuberculosis cohort identifies cell state associations with demographics, environment and disease

Nathan A. et al, (2021), Nature immunology, 22, 781 - 793

A sex-specific evolutionary interaction between ADCY9 and CETP

Gamache I. et al, (2021)

HATK: HLA analysis toolkit.

Choi W. et al, (2021), Bioinformatics, 37, 416 - 418

OUP accepted manuscript

(2021), Human molecular genetics

HLA autoimmune risk alleles restrict the hypervariable region of T cell receptors

Ishigaki K. et al, (2020)

Genome-wide Study Identifies Association between HLA-B∗55:01 and Self-Reported Penicillin Allergy.

Krebs K. et al, (2020), Am j hum genet, 107, 612 - 621

Higher Native Peruvian ancestry proportion is associated with tuberculosis progression risk

Asgari S. et al, (2020)

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