Contact information
Chen-Yi Wang
Senior Research Associate
My research journey began with a fascination for chromatin biology and epigenetics, driven by a desire to understand how chromatin structure and epigenetic modifications regulate gene expression and shape cellular functions. This curiosity gradually led me to expand beyond traditional wet-lab research into the computational analysis of genomic data, bridging experimental and bioinformatic approaches.
After training as a molecular and cellular biologist, I developed strong expertise in next-generation sequencing (NGS)and later joined Professor Oppermann’s group at the Botnar Research Centre in 2017, where I further strengthened my computational skills through the Computational Genomics Analysis and Training (CGAT) program.
Today, my work integrates experimental and computational genomics to investigate tumour biology, applying bioinformatic methods on NGS, long-read sequencing, single-cell and spatial transcriptomics to uncover disease-associated mechanisms and the molecular pathways that drive cancer progression.
Looking ahead, I aim to combine genomics, transcriptomics, proteomics, and spatial data to reveal disease heterogeneity and microenvironmental complexity, ultimately contributing to the discovery of new therapeutic targets and advancing precision medicine.
Key publications
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Flickin’ the ubiquitin switch
Journal article
Wright DE. et al, (2011), Epigenetics, 6, 1165 - 1175
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Beating the odds: BETs in disease.
Journal article
Wang C-Y. and Filippakopoulos P., (2015), Trends biochem sci, 40, 468 - 479
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The C-Terminus of Histone H2B Is Involved in Chromatin Compaction Specifically at Telomeres, Independently of Its Monoubiquitylation at Lysine 123
Journal article
Wang C-Y. et al, (2011), Plos one, 6, e22209 - e22209
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Depleting Components of the THO Complex Causes Increased Telomere Length by Reducing the Expression of the Telomere-Associated Protein Rif1p
Journal article
Yu T-Y. et al, (2012), Plos one, 7, e33498 - e33498
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The SAGA coactivator complex acts on the whole transcribed genome and is required for RNA polymerase II transcription
Journal article
Bonnet J. et al, (2014), Genes & development, 28, 1999 - 2012
Recent publications
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A systems-based approach to uterine fibroids identifies differential splicing associated with abnormal uterine bleeding
Preprint
Wang C. et al, (2024)
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Multivalent Histone and DNA Engagement by a PHD/BRD/PWWP Triple Reader Cassette Recruits ZMYND8 to K14ac-Rich Chromatin.
Journal article
Savitsky P. et al, (2016), Cell rep, 17, 2724 - 2737
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Promiscuous targeting of bromodomains by bromosporine identifies BET proteins as master regulators of primary transcription response in leukemia.
Journal article
Picaud S. et al, (2016), Sci adv, 2
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Beating the odds: BETs in disease.
Journal article
Wang C-Y. and Filippakopoulos P., (2015), Trends biochem sci, 40, 468 - 479